Minian

Minian

With increasing interest in miniscopes as a method for in vivo calcium imaging, there is need for tools that increase accessibility to the computationally complex process of analysing calcium signals from raw video data. There are several barriers keeping new users...
pMAT (photometry modular analysis tool)

pMAT (photometry modular analysis tool)

Fiber photometry has become a widely used technology for recording cellular activity and neurotransmitter signals through the use of fiber optics and fluorescent sensors. However, a challenge that remains with fiber photometry is learning how to analyze the large data...
LED Zappelin’

LED Zappelin’

Two-photon microscopy is a powerful technique for investigating the structures and functions of biological systems. However, combining two-photon microscopy with other light sources, such as those used for driving optogenetic actuators, or for visual stimulation in...
Pycro-Manager

Pycro-Manager

Light microscopy remains an incredibly powerful and important method in neuroscience. The growing use of computational microscopy and machine learning methods in conjunction with light microscopy now demands adaptive imaging that requires data processing during...
TetrODrive

TetrODrive

TetrODrive is a lightweight, 3D printed microdrive for electrophysiology and optophysiology. Marcel Brosch and colleagues developed and shared design files and build instructions for this device. TetrODrive can be used for in vivo tetrode recording, optical imaging,...