AUGUST 22, 2019
We’d like to highlight groups and companies that support an open-source framework to their software and/or hardware in behavioral neuroscience. One of these groups is SpikeGadgets, a company co-founded by Mattias Karlsson and Magnus Karlsson.
SpikeGadgets is a group of electrophysiologists and engineers who are working to develop neuroscience hardware and software tools. Their open-source software, Trodes, is a cross-platform software suite for neuroscience data acquisition and experimental control, which is made up of modules that communicate with a centralized GUI to visualize and save electrophysiological data. Trodes has a camera module and a StateScript module, which is a state-based scripting language that can be used to program behavioral tasks through using lights, levels, beam breaks, lasers, stimulation sources, audio, solenoids, etc. The camera module can be used to acquire video that can synchronize to neural recordings; the camera module can track the animal’s position in real-time or play it back after the experiment. The camera module can work with USB webcams or GigE cameras.
Paired with the Trodes software and StateScript language is the SpikeGadgets hardware that can be purchased on their website. The hardware is used for data acquisition (Main Control Unit, used for electrophysiology) and behavioral control (Environmental Control Unit). SpikeGadgets also provides both Matlab and Python toolboxes on their site that can be used to analyze both behavioral and electrophysiological data. Trodes can be used on Windows, Linux, or Mac, and there are step-by-step instructions for how to install and use Trodes on the group’s bitbucket page.
Spikegadgets mission is “to develop the most advanced neuroscience tools on the market, while preserving ease of use and science-driven customization.”
For more information on SpikeGadgets or to download or purchase their software or hardware, check out their website here.
There is additional documentation on their BitBucket Wiki, with a user manual, instructions for installation, and FAQ.
Check out their entire list of collaborators, contributors, and developers here.